Learning nonequilibrium statistical mechanics and dynamical phase transitions
Y Tang, Liu, J Zhang, P Zhang.
Nature Communications 15 (1), 1117(2024)
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A deep learning model for type II polyketide natural product prediction without sequence alignment
J Huang, Q Gao, Y Tang, Y Wu, H Zhang, Z Qin.
Digital Discovery 2 (5), 1484-1493(2023)
Neural-network solutions to stochastic reaction networks
Y Tang, J Weng, P Zhang.
Nature Machine Intelligence 5 (4), 376-385(2023)
Quantifying information of intracellular signaling:progress with machine learning
Y Tang, A Hoffmann.
Reports on Progress in Physics 85 (8), 086602(2022)
Optimizing higher-order network topology for synchronization of coupled phase oscillators
Y Tang, D Shi, L Lü.
Communications Physics 5 (1), 96(2022)
Quantifying information accumulation encoded in the dynamics of biochemical signaling
Y Tang, A Adelaja, FXF Ye, E Deeds, R Wollman, A Hoffmann.
Nature communications 12 (1), 1272(2021)
Free energy amplification by magnetic flux for driven quantum systems
Y Tang.
Communications Physics 4 (1), 9(2021)
An incoherent feedforward loop interprets NFκB/RelA dynamics to determine TNF-induced necroptosis decisions
Marie Oliver Metzig, Y Tang, Simon Mitchell, Brooks Taylor, Robert Foreman, Roy Wollman, Alexander Hoffmann.
Molecular systems biology 16 (12), e9677(2020)
Chemotaxis as a navigation strategy to boost range expansion
J Cremer, T Honda, Y Tang, J Wong-Ng, M Vergassola, T Hwa.
Nature 575 (7784), 658-663(2019)
Escape rate for nonequilibrium processes dominated by strong nondetailed balance force
Y Tang, S Xu, P Ao.
The Journal of Chemical Physics 148 (6)(2018)
Potential landscape of high dimensional nonlinear stochastic dynamics with large noise
Y Tang, R Yuan, G Wang, X Zhu, P Ao.
Scientific reports 7 (1), 15762(2017)
Generating transverse response explicitly from harmonic oscillator
Y Yao, Y Tang, P Ao.
Physical Review B 96 (13), 134414(2017)
SDE decomposition and A-type stochastic interpretation in nonequilibrium processes
R Yuan, Y Tang, P Ao.
Frontiers of Physics 12, 1-9(2017)
Reversed graph embedding resolves complex single-cell trajectories
X Qiu, Q Mao, Y Tang, L Wang, R Chawla, H Pliner, C Trapnell.
Nature methods 14 (10), 979-982(2017)
Decoding early myelopoiesis from dynamics of core endogenous network
H Su, G Wang, R Yuan, J Wang, Y Tang, P Ao, X Zhu.
Science China Life Sciences 60, 627-646(2017)
Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond
R Yuan, Y Tang, P Ao.
The Journal of Chemical Physics 145, 147104 (2016)
Anomalous free energy changes induced by topology
Y Tang, R Yuan, P Ao.
PHYSICAL REVIEW E 92, 062129 (2015)
Work relations connecting nonequilibrium steady states without detailed balance
Y Tang, R Yuan, J Chen, P Ao.
PHYSICAL REVIEW E 91, 042108 (2015)
Controlling symmetry-breaking states by a hidden quantity in multiplicative noise
Y Tang, R Yuan, J Chen,and P Ao.
PHYSICAL REVIEW E 90, 052121 (2014)
Summing over trajectories of stochastic dynamics with multiplicative noise
Y Tang, R Yuan, P Ao.
The Journal of Chemical Physics 141, 044125 (2014)
Nonequilibrium work relation beyond the Boltzmann-Gibbs distribution
Y Tang, R Yuan, P Ao.
PHYSICAL REVIEW E 89, 062112 (2014)
Dynamical behaviors determined by the Lyapunov function in competitive Lotka-Volterra systems
Y Tang, R Yuan, Y Ma.
PHYSICAL REVIEW E 87, 012708 (2013)