CV

Education

• Ph.D. in Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai, China. 2013.09 – 2018.06
  • Advisor: Ping Ao.
  • Thesis: “Extended free energy equality and potential function in high dimension for nonequilibrium stochastic dynamics”
• Exchange graduate student in Department of Physics.University of California, San Diego, USA. 2016.07 – 2018.03
  • Advisor: Terence Hwa.
• B.S. in Applied Mathematics, Zhiyuan College.Shanghai Jiao Tong University, Shanghai, China. 2009.09 – 2013.06
  • Advisor: Ping Ao.
  • Thesis: “Path Integral Approach to Stochastic Process: Starting From Ornstein-Uhlenbeck Process”

Work experience

• 2019.09 - 2024.04: associate professor
  • Beijing Normal University
  • Duties includes: Teaching and research

Publications

Exploring transitions in finite-size Potts model: comparative analysis using Wang–Landau sampling and parallel tempering

Learning noise-induced transitions by multiscaling reservoir computing

Learning nonequilibrium statistical mechanics and dynamical phase transitions

A deep learning model for type II polyketide natural product prediction without sequence alignment

Neural-network solutions to stochastic reaction networks

Quantifying information of intracellular signaling:progress with machine learning

Optimizing higher-order network topology for synchronization of coupled phase oscillators

Quantifying information accumulation encoded in the dynamics of biochemical signaling

Free energy amplification by magnetic flux for driven quantum systems

An incoherent feedforward loop interprets NFκB/RelA dynamics to determine TNF-induced necroptosis decisions

Chemotaxis as a navigation strategy to boost range expansion

Escape rate for nonequilibrium processes dominated by strong nondetailed balance force

Potential landscape of high dimensional nonlinear stochastic dynamics with large noise

Generating transverse response explicitly from harmonic oscillator

SDE decomposition and A-type stochastic interpretation in nonequilibrium processes

Reversed graph embedding resolves complex single-cell trajectories

Decoding early myelopoiesis from dynamics of core endogenous network

Construction of the landscape for multi-stable systems: Potential landscape, quasi-potential, A-type integral and beyond

Anomalous free energy changes induced by topology

Work relations connecting nonequilibrium steady states without detailed balance

Controlling symmetry-breaking states by a hidden quantity in multiplicative noise

Summing over trajectories of stochastic dynamics with multiplicative noise

Nonequilibrium work relation beyond the Boltzmann-Gibbs distribution

Dynamical behaviors determined by the Lyapunov function in competitive Lotka-Volterra systems

Teaching

LiYun-214: phase transitions and critical phenomena(Fall 2023)